Implementing easyblocks¶

The basics¶

An easyblock is a Python module that implements a software build and installation procedure.

This concept is essentially implemented as a Python script that plugs into the EasyBuild framework.

EasyBuild will leverage easyblocks as needed, depending on which software packages it needs to install. Which easyblock is required is determined by the easyblock easyconfig parameter, if it is present, or by the software name.

Generic vs software-specific easyblocks¶

Easyblocks can either be generic or software-specific.

Generic easyblocks implement a "standard" software build and installation procedure that is used by multiple different software packages. A commonly used example is the ConfigureMake generic easyblock, which implements the standard configure - make - make install installation procedure used by most GNU software packages.

Software-specific easyblocks implement the build and installation procedure for a particular software package. Typically this involves highly customised steps, for example specifying dedicated configuration options, creating or adjusting specific files, executing non-standard shell commands, etc. Usually a custom implementation of the sanity check is also included.

Using a generic easyblock requires specifying the easyblock parameter in the easyconfig file. If it is not specified, EasyBuild will try and find the software-specific easyblock derived from the software name.

The distinction between generic and software-specific easyblocks can be made based on the naming scheme that is used for an easyblock (see below).

Naming¶

Easyblocks need to follow a strict naming scheme, to ensure that EasyBuild can pick them up as needed. This involves two aspects:

the name of the Python class;
the name and location of the Python module file.

Python class name¶

The name of the Python class is determined by the software name for software-specific easyblocks. It consists of a prefix 'EB_', followed by the (encoded) software name.

Because of limitations in Python on characters allowed in names of Python classes, only alphanumeric characters and underscores (_) are allowed. Any other characters are replaced following an encoding scheme:

spaces are replaced by underscores (_);
dashes - are replaced by _minus_;
underscores are replaced by _underscore_;

The encode_class_name function provided in easybuild.tools.filetools returns the expected class name for a given software name; for example:

$ python3 -c "from easybuild.tools.filetools import encode_class_name; print(encode_class_name('netCDF-Fortran'))"
EB_netCDF_minus_Fortran

Python class name for generic easyblocks

For generic easyblocks, the class name does not include an EB_ prefix (since there is no need for an escaping mechanism) and hence the name is fully free to choose, taking into account the restriction to alphanumeric characters and underscores.

For code style reasons, the class name should start with a capital letter and use CamelCasing.

Examples include Bundle, ConfigureMake, CMakePythonPackage.

Python module name and location¶

The filename of the Python module is directly related to the name of Python class it provides.

It should:

not include the EB_ prefix of the class name for software-specific easyblocks;
consists only of lower-case alphanumeric characters ([a-z0-9]) and underscores (_);
- dashes (-) are replaced by underscores (_);
- any other non-alphanumeric characters (incl. spaces) are simply dropped;

Examples include:

gcc.py (for GCC)
netcdf_fortran.py (for netCDF-Fortran)
gamess_us.py (for GAMESS (US))

The get_module_path function provided by the EasyBuild framework in the easybuild.framework.easyconfig.easyconfig module returns the (full) module location for a particular software name or easyblock class name. For example:

>>> from easybuild.framework.easyconfig.easyconfig import get_module_path
>>> get_module_path('netCDF-Fortran')
'easybuild.easyblocks.netcdf_fortran'
>>> get_module_path('EB_netCDF_minus_Fortran')
'easybuild.easyblocks.netcdf_fortran'

The location of the Python module is determined by whether the easyblock is generic or software-specific. Generic easyblocks are located in the easybuid.easyblocks.generic namespace, while software-specific easyblocks live in the easybuild.easyblocks namespace directly.

To keep things organised, the actual Python module files for software-specific easyblocks are kept in 'letter' subdirectories, rather than in one large 'easyblocks' directory (see https://github.com/easybuilders/easybuild-easyblocks/tree/main/easybuild/easyblocks), but this namespace is collapsed transparently by EasyBuild (you don't need to import from letter subpackages).

To let EasyBuild pick up one or more new or customized easyblocks, you can use the --include-easyblocks configuration option. As long as both the filename of the Python module and the name of the Python class are correct, EasyBuild will use these easyblocks when needed.

Structure of an easyblock¶

The example below shows the overall structure of an easyblock:

from easybuild.framework.easyblock import EasyBlock
from easybuild.tools.run import run_cmd


class EB_Example(EasyBlock):
    """Custom easyblock for Example"""

    def configure_step(self):
        """Custom implementation of configure step for Example"""

        # run configure.sh to configure the build
        run_cmd("./configure.sh --install-prefix=%s" % self.installdir)

Each easyblock includes an implementation of a class that (directly or indirectly) derives from the abstract EasyBlock class.

Typically some useful functions provided by the EasyBuild framework are imported at the top of the Python module.

In the class definition, one or more '*_step' methods (and perhaps a couple of others) are redefined, to implement the corresponding step in the build and installation procedure.

Each easyblock must implement the configure, build and install steps, since these are not implemented in the abstract EasyBlock class. This could be done explicitly by redefining the corresponding *_step methods, or implicitly by deriving from existing (generic) easyblocks.

The full list of methods that can be redefined in an easyblock can be consulted in the API documentation.

Deriving from existing easyblocks¶

When implementing an easyblock, it is common to derive from an existing (usually generic) easyblock, and to leverage the functionality provided by it. This approach is typically used when only a specific part of the build and installation procedure needs to be customised.

In the (fictitious) example below, we derive from the generic ConfigureMake easyblock to redefine the configure step. In this case, we are extending the configure step as implemented by ConfigureMake rather than redefining it entirely, since we call out to the original configure_step method at the end.

from easybuild.easyblocks.generic.configuremake import ConfigureMake
from easybuild.tools.filetools import copy_file


class EB_Example(ConfigureMake):
    """Custom easyblock for Example"""

    def configure_step(self):
        """Custom implementation of configure step for Example"""

        # use example make.cfg for x86-64
        copy_file('make.cfg.x86', 'make.cfg')

        # call out to original configure_step implementation of ConfigureMake easyblock
        super(EB_Example, self).configure_step()

Easyconfig parameters¶

All of the easyconfig parameters that are defined in an easyconfig file are available via the EasyConfig instance that can be accessed through self.cfg in an easyblock. For instance, if the easyconfig file specifies

name = 'example'
version = '2.5.3'
versionsuffix = '-Python-3.7.4'

then these three parameters are accessible within an easyblock via self.cfg['name'], self.cfg['version'] and self.cfg['versionsuffix'].

A few of the most commonly used parameters can be referenced directly:

self.name is equivalent with self.cfg['name'];
self.version is equivalent with self.cfg['version'];
self.toolchain is equivalent with self.cfg['toolchain'];

Updating parameters¶

You will often find that you need to update some easyconfig parameters in an easyblock, for example configopts which specifies options for the configure command.

Because of implementation details (related to how template values like %(version)s are handled), you need to be a bit careful here...

To completely redefine the value of an easyconfig parameter, you can use simple assignment. For example:

self.cfg['example'] = "A new value for the example easyconfig parameter."

If want to add to the existing value however, you must use the self.cfg.update method. For example:

self.cfg.update('some_list', 'example')

This will not work (because self.cfg['some_list'] does not return a reference to the original value, but to a temporary copy thereof):

# anti-pattern, this does NOT work as expected!
self.cfg['some_list'].append('example')

Custom parameters¶

Additional custom easyconfig parameters can be defined in an easyblock to allowing steering its behaviour. This is done via the extra_options static method. Custom parameters can be specified to be mandatory.

The example below shows how this can be implemented:

from easybuild.easyblocks.generic.configuremake import ConfigureMake
from easybuild.framework.easyconfig import CUSTOM, MANDATORY


class EB_Example(ConfigureMake):
    """Custom easyblock for Example"""

    @staticmethod
    def extra_options():
        """Custom easyconfig parameters for Example"""
        extra_vars = {
            'required_example_param': [None, "Example required custom parameter", MANDATORY],
            'optional_example_param': [None, "Example optional custom parameter", CUSTOM],
        }
        return ConfigureMake.extra_options(extra_vars)

The first element in the list of a defined custom parameter corresponds to the default value for that parameter (both None in the example above). The second element provides some informative help text, and the last element indicates whether the parameter is mandatory (MANDATORY) or just an optional custom parameter (CUSTOM).

Easyblock constructor¶

In the class constructor of the easyblock, i.e. the __init__ method, one or more class variables can be initialised. These can be used for sharing information between different *_step methods in the easyblock.

For example:

from easybuild.framework.easyblock import EasyBlock


class EB_Example(EasyBlock):
    """Custom easyblock for Example"""

    def __init__(self, *args, **kwargs):
        """Constructor for Example easyblock, initialises class variables."""

        # call out to original constructor first, so 'self' (i.e. the class instance) is initialised
        super(EB_Example, self).__init__(*args, **kwargs)

        # initialise class variables
        self.example_value = None
        self.example_list = []

File operations¶

File operations is a common use case for implementing easyblocks, hence the EasyBuild framework provides a number of useful functions related to this, including:

read_file(<path>): read file at a specified location and returns its contents;
write_file(<path>, <text>) at a specified location with provided contents; to append to an existing file, use append=True as an extra argument;
copy_file(<src>, <dest>) to copy an existing file;
apply_regex_substitutions(<path>, <list of regex substitutions>) to patch an existing file;

All of these functions are provided by the easybuild.tools.filetools module.

Executing shell commands¶

For executing shell commands two functions are provided by the easybuild.tools.run module:

run_cmd(<cmd>) to run a non-interactive shell command;
run_cmd_qa(<cmd>, <dict with questions & answers>) to run an interactive shell command;

Both of these accept a number of optional arguments:

simple=True to just return True or False to indicate a successful execution, rather than the default return value, i.e., a tuple that provides the command output and the exit code (in that order);
path=<path> to run the command in a specific subdirectory;

The run_cmd_qa function takes two additional specific arguments:

no_qa=<list> to specify a list of patterns to recognize non-questions;
std_qa=<dict> to specify regular expression patterns for common questions, and the matching answer;

Manipulating environment variables¶

To (re)define environment variables, the setvar function provided by the easybuild.tools.environment module should be used.

This makes sure that the changes being made to the specified environment variable are kept track of, and that they are handled correctly under --extended-dry-run.

Logging and errors¶

It is good practice to include meaningful log messages in the *_step methods being customised in the easyblock, to enrich the EasyBuild log with useful information for later debugging or diagnostics.

For logging, the provided self.log logger class should be used. You can use the self.log.info method to log an informative message. Similar methods are available for logging debug messages (self.log.debug), which are only emitted when eb is run with debugging mode enabled (--debug or -d), and for logging warning messages (self.log.warning).

If something goes wrong, you can raise an EasyBuildError instance to report the error.

For example:

from easybuild.framework.easyblock import EasyBlock
from easybuild.tools.build_log import EasyBuildError
from easybuild.tools.run import run_cmd


class EB_Example(EasyBlock):
    """Custom easyblock for Example"""

    def configure_step(self):
        """Custom implementation of configure step for Example"""

        cmd = "./configure --prefix %s" % self.installdir)
        out, ec = run_cmd(cmd)

        success = 'SUCCESS'
        if success in out:
            self.log.info("Configuration command '%s' completed with success." % cmd)
        else:
            raise EasyBuildError("Pattern '%s' was not found in output of '%s'." % (success, cmd))

Custom sanity check¶

For software-specific easyblocks, a custom sanity check is usually included to verify that the installation was successful or not.

This is done by redefining the sanity_check_step method in the easyblock. For example:

from easybuild.framework.easyblock import EasyBlock

class EB_Example(EasyBlock):
    """Custom easyblock for Example"""

    def sanity_check_step(self):
        """Custom sanity check for Example."""

        custom_paths = {
            'files': ['bin/example'],
            'dirs': ['lib/examples/'],
        }
        custom_commands = ['example --version']

        # call out to parent to do the actual sanity checking, pass through custom paths and commands
        super(EB_Example, self).sanity_check_step(custom_paths=custom_paths, custom_commands=custom_commands)

You can both specify file paths and subdirectories to check for, which are specified relative to the installation directory, as well as simple commands that should execute successfully after completing the installation and loading the generated module file.

It is up to you how extensive you make the sanity check, but it is recommended to make the check as complete as possible to catch any potential build or installation problems that may occur, while ensuring that it can run relatively quickly (in seconds, or at most a couple of minutes).

Version-specific parts¶

In some cases version-specific actions or checks need to be included in an easyblock. For this, it is recommended to use LooseVersion rather than directly comparing version numbers using string values.

For example:

from distutils.version import LooseVersion
from easybuild.framework.easyblock import EasyBlock


class EB_Example(EasyBlock):
    """Custom easyblock for Example"""

    def sanity_check_step(self):
        """Custom sanity check for Example."""

        custom_paths = {
            'files': [],
            'dirs': [],
        }

        # in older versions, the binary used to be named 'EXAMPLE' rather than 'example'
        if LooseVersion(self.version) < LooseVersion('1.0'):
            custom_paths['files'].append('bin/EXAMPLE')
        else:
            custom_paths['files'].append('bin/example')

        super(EB_Example, self).sanity_check_step(custom_paths=custom_paths)

Compatibility with `--extended-dry-run` and `--module-only`¶

Some special care must be taken to ensure that an easyblock is fully compatible with --extended-dry-run / -x (see Inspecting install procedures) and --module-only.

For compatibility with --extended-dry-run, you need to take into account that specified operations like manipulating files or running shell commands will not actually be executed. You can check whether an easyblock is being run in dry run mode via self.dry_run.

For example:

from easybuild.framework.easyblock import EasyBlock
from easybuild.tools.build_log import EasyBuildError
from easybuild.tools.run import run_cmd


class EB_Example(EasyBlock):
    """Custom easyblock for Example"""

    def configure_step(self):
        """Custom implementation of configure step for Example"""

        cmd = "./configure --prefix %s" % self.installdir)
        out, ec = run_cmd(cmd)

        success = 'SUCCESS'
        if success in out:
            self.log.info("Configuration command '%s' completed with success." % cmd)

        # take into account that in dry run mode we won't get any output at all
        elif self.dry_run:
            self.log.info("Ignoring missing '%s' pattern since we're running in dry run mode." % success)

        else:
            raise EasyBuildError("Pattern '%s' was not found in output of '%s'." % (success, cmd))

For --module-only, you should make sure that both the make_module_step, including the make_module_* submethods, and the sanity_check_step methods do not make any assumptions about the presence of certain environment variables, or that class variables have been defined already.

This is required because under --module-only the large majority of the *_step functions are simply skipped entirely. So, if the configure_step method is responsible for defining class variables that are picked up in sanity_check_step, the latter may run into unexpected initial values like None. A possible workaround is to define a separate custom method to define the class variables, and to call out to this method from configure_step and sanity_check_step (for the latter, conditionally, i.e., only if the class variables still have the initial values).

For example:

from easybuild.framework.easyblock import EasyBlock


class EB_Example(EasyBlock):
    """Custom easyblock for Example"""

    def __init__(self, *args, **kwargs):
        """Easyblock constructor."""
        super(EB_Example, self).__init__(*args, **kwargs)

        self.command = None

    def set_command(self):
        """Initialize 'command' class variable."""
        # $CC environment variable set by 'prepare' step determines exact command
        self.command = self.name + '-' + os.getenv('CC')

    def configure_step(self):
        """Custom configure step for Example."""

        self.set_command()
        self.cfg.update('configopts', "COMMAND=%s" % self.command)

        super(EB_Example, self).configure_step()

    def sanity_check_step(self):
        """Custom implementation of configure step for Example"""

        if self.command is None:
            self.set_command()

        super(EB_Example, self).sanity_check_step(custom_commands=[self.command])

Exercise¶

Exercise I.1¶

Try implementing a new custom easyblock for eb-tutorial, which derives directly from the base EasyBlock class.

Your easyblock should:

define a custom mandatory easyconfig parameter named message;
run cmake to configure the installation, which includes at least:
- specifying the correct installation prefix (using the -DCMAKE_INSTALL_PREFIX=... option);
- passing down the value of message easyconfig parameter via -DEBTUTORIAL_MSG=...
run make to build eb-tutorial;
run make install to install the generated binary;
perform a custom sanity check to ensure the installation is correct;
pick up on commonly used easyconfig parameters like configopts and preinstallopts where appropriate;

(click to show solution)

Here's a complete custom easyblock for eb-tutorial that derives from the base EasyBlock class, which should be included in a file named eb_tutorial.py.

We need to implement the configure_step, build_step, and install_step methods in order to have a fully functional easyblock.

The configure, build, and install steps take into account the corresponding easyconfig parameters that allow customizing these commands from an easyconfig file.

from easybuild.framework.easyblock import EasyBlock
from easybuild.framework.easyconfig import MANDATORY
from easybuild.tools.run import run_cmd


class EB_eb_minus_tutorial(EasyBlock):
    """Custom easyblock for eb-tutorial."""

    @staticmethod
    def extra_options():
        extra = EasyBlock.extra_options()
        extra.update({
            'message': [None, "Message that eb-tutorial command should print", MANDATORY],
        })
        return extra

    def configure_step(self):
        """Custom configure step for eb-tutorial: define EBTUTORIAL_MSG configuration option."""

        cmd = ' '.join([
            self.cfg['preconfigopts'],
            "cmake",
            "-DCMAKE_INSTALL_PREFIX='%s'" % self.installdir,
            "-DEBTUTORIAL_MSG='%s'" % self.cfg['message'],
            self.cfg['configopts'],
        ])
        run_cmd(cmd)

    def build_step(self):
        """Build step for eb-tutorial"""

        cmd = ' '.join([
            self.cfg['prebuildopts'],
            "make",
            self.cfg['buildopts'],
        ])
        run_cmd(cmd)

    def install_step(self):
        """Install step for eb-tutorial"""

        cmd = ' '.join([
            self.cfg['preinstallopts'],
            "make install",
            self.cfg['installopts'],
        ])
        run_cmd(cmd)

    def sanity_check_step(self):
        custom_paths = {
            'files': ['bin/eb-tutorial'],
            'dirs': [],
        }
        custom_commands = ['eb-tutorial']
        return super(EB_eb_minus_tutorial, self).sanity_check_step(custom_paths=custom_paths,
                                                                   custom_commands=custom_commands)

Exercise I.2¶

Try implementing another new custom easyblock for eb-tutorial, which derives from the generic CMakeMake easyblock.

Your easyblock should only:

define a custom mandatory easyconfig parameter named message;
pass down the value of message easyconfig parameter via -DEBTUTORIAL_MSG=...
perform a custom sanity check to ensure the installation is correct;

(click to show solution)

When deriving from the CMakeMake generic easyblock, there is a lot less to worry about.

We only need to customize the configure_step method to ensure that the -DEBTUTORIAL_MSG configuration option is specified; the CMakeMake easyblock already takes care of specifying the location of the installation directory (and a bunch of other configuration options, like compiler commands and flags, etc.).

Implementing the build_step and install_step methods is no longer needed, the standard procedure that is run by the CMakeMake generic easyblock is fine, and even goes beyond what we did in the previous exercise (like building in parallel with make -j).

from easybuild.easyblocks.generic.cmakemake import CMakeMake
from easybuild.framework.easyconfig import MANDATORY
from easybuild.tools.run import run_cmd

class EB_eb_minus_tutorial(CMakeMake):
    """Custom easyblock for eb-tutorial."""

    @staticmethod
    def extra_options():
        extra = CMakeMake.extra_options()
        extra.update({
            'message': [None, "Message that eb-tutorial command should print", MANDATORY],
        })
        return extra

    def configure_step(self):
        """Custom configure step for eb-tutorial: define EBTUTORIAL_MSG configuration option."""
        self.cfg.update('configopts', "-DEBTUTORIAL_MSG='%s'" % self.cfg['message'])

        super(EB_eb_minus_tutorial, self).configure_step()

    def sanity_check_step(self):
        custom_paths = {
            'files': ['bin/eb-tutorial'],
            'dirs': [],
        }
        custom_commands = ['eb-tutorial']
        return super(EB_eb_minus_tutorial, self).sanity_check_step(custom_paths=custom_paths,
                                                                   custom_commands=custom_commands)

Last update: January 30, 2023

Implementing easyblocks¶

The basics¶

Generic vs software-specific easyblocks¶

Naming¶

Python class name¶

Python module name and location¶

Structure of an easyblock¶

Deriving from existing easyblocks¶

Easyconfig parameters¶

Updating parameters¶

Custom parameters¶

Easyblock constructor¶

File operations¶

Executing shell commands¶

Manipulating environment variables¶

Logging and errors¶

Custom sanity check¶

Version-specific parts¶

Compatibility with --extended-dry-run and --module-only¶

Exercise¶

Exercise I.1¶

Exercise I.2¶

Compatibility with `--extended-dry-run` and `--module-only`¶